PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G205500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB
Protein Properties Length: 329aa    MW: 36502.6 Da    PI: 8.1973
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G205500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.1e-171462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W++eEd +l+d++ ++G+g +W + +++ g++R++k+c++rw++yl
  Aqcoe2G205500.1.p 14 KGPWSPEEDSKLKDYIDKHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                       79*********************************************97 PP

2Myb_DNA-binding37.65.3e-1269111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g ++ +Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  Aqcoe2G205500.1.p  69 GEFSDDEDRIICSLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                        789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.466962IPR017930Myb domain
SuperFamilySSF466891.22E-2611109IPR009057Homeodomain-like
SMARTSM007175.9E-121364IPR001005SANT/Myb domain
PfamPF002491.8E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-241569IPR009057Homeodomain-like
CDDcd001673.11E-91662No hitNo description
PROSITE profilePS5129421.88963117IPR017930Myb domain
SMARTSM007171.7E-1167115IPR001005SANT/Myb domain
PfamPF002499.2E-1169111IPR001005SANT/Myb domain
CDDcd001672.89E-870113No hitNo description
Gene3DG3DSA:1.10.10.609.9E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKDYID KHGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC SLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGV  120
VPSSHRKPPQ PHFPSFQTPS SASLPYRSCN YNTTYYTPNR SFTGLDQPTS SVPSSFLNNS  180
TTTTTTLFQP QESLLGSMQP YHPVKDHLLI MFGGEPSCSS SDGSCNQISY VKEMEYDQHG  240
ANNASGGVGR NEQVPLESYF FNNAEENQKL ILNGSSTAAV SNGLWGETSI DYGVDQDIKQ  300
FVNNHSSSSS SSNFLFDENK TQGKVMYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744721e-112DQ074472.1 Malus x domestica MYB24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241795.11e-136PREDICTED: transcription factor RAX2-like
TrEMBLU5GGW81e-122U5GGW8_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0004s22490.11e-122(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-79myb domain protein 36